Brisbane Christian College is governed by a Board of Directors that is appointed by the leadership of Life Church Brisbane. The College Board of Directors holds a monthly meeting reviewing College activity (such as enrolment trends, staffing, budgets and policy) with respect to strategic plans. The College Board is not involved in the day-to-day operation of the College. This is delegated to the Principal who is required to manage the College within guidelines set by the Board.

The College Board of Directors appoints a Finance Committee that meets monthly to receive a Financial Report from the College Business Manager. This committee monitors the financial performance of the College and makes recommendations to the Board on matters such as the Annual Budget and fee levels.

The accounts of Brisbane Christian College and Southside Christian Centre Property Ltd are audited annually.